Thanks for the pix, Todd ... helps a lot. The good side looks fine to me, especially after adjusting the mold a little. All pieces of wood will bend slightly differently, so I'm not entirely surprised.
I can see how the 'wild side' is different in shape. I wonder if you can put a long straight piece of wood on top to bridge what looks like a low spot beyond the 'hump' and then clamp it to pull the low spot upward until the curve is straight ... even as a temporary thing (since it's like in the way of installing side panels) while you fit a custom mold to that area ... might need some experimenting. I would also say that if you got it 90% correct, that fill/fairing and the overall size and detail of the finished boat would result in slight differences not being noticeable. I always say, "Each step of construction is a chance to fix what went wrong in the LAST one AND is a new step to complete." Ask me about the pilot house door where I cut the opening too large and had to fit ply into the opening to reduce it to the correct size (and fair it all in), or about the nice bulkhead alignment lines I drew on the hull ... then installed the bulkhead with the line on the front face at the top, and the line aligned with the back face at the bottom ... nobody could ever tell that he bulkhead had a bit of slope to it! In the end, you get a great boat ... just keep going and keep an open mind, fix, forget, progress onward... 'tis the life of a boat builder.
Brian