Oh ...THOSE! I use solid wood for that because it minimizes the end grain exposure. I seal the end grain with smooth silica-thickened epoxy, rubbing it in good and leaving it on thick, then give the wood at least 3 coats of epoxy (usually with leftover epoxy while working on other stuff). I don't glass the nailers... note that they are separated from the hull by a layer of glass and epoxy and rot is not likely to spread anywhere but within the nailer piece of wood. Once the decks are installed, the nailers are more inconsequential. What I've also done, is to draw a line on the hull around the perimeter of the (bottom edge of) the decking and then go back with a gallon Ziplog full of thickened epoxy and just squeeze out a line of epoxy, say the size of a dime in diameter, along the line ...let it cure. Epoxy will not rot. Once cured the line of epoxy works like a continuous nailer that you can glue the deck down on ...squeeze fresh epoxy around the whole perimeter, on top of the cured 'big bead' of epoxy, and then let the deck settle down onto it. If your deck fit isn't too far off, this works great.
Brian